PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G22960.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family YABBY
Protein Properties Length: 188aa    MW: 21248.3 Da    PI: 9.4837
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G22960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY242.11.2e-7481635170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                       ++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+   q l+a+++       + +e lk+++ ++++n++++ s+s++ ++
  LPERR03G22960.2   8 PAPEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPAVED-------PFQESLKMHNISFRENYSEYGSSSKYGRV 94 
                      579****************************************************996.......899*************************9 PP

            YABBY  99 ekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       ++ s+n+  ++ +    +r PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
  LPERR03G22960.2  95 PMMfSRNDPGHMLH----VRTPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 163
                      99879999999997....899**************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.0E-7110163IPR006780YABBY protein
SuperFamilySSF470952.23E-8106157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.7E-5109157IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSAQIALPAP EHVCYVHCNF CNTILAVSVP SNSMLNIVTV RCGHCTSLLS VNLRGLIQSL  60
PAVEDPFQES LKMHNISFRE NYSEYGSSSK YGRVPMMFSR NDPGHMLHVR TPEKRQRVPS  120
AYNRFIKEEI RRIKANNPDI SHREAFSTAA KNWAHFPNIH FGLGSHESSK KLDEAIGAPS  180
PQKIQRLY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740140.0AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds.
GenBankAF0987530.0AF098753.1 Oryza sativa clone FIL2 unknown mRNA.
GenBankAK0704790.0AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence.
GenBankEU8469820.0EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628574.11e-125PREDICTED: protein YABBY 2 isoform X1
RefseqXP_015628575.11e-125PREDICTED: protein YABBY 2 isoform X1
SwissprotQ10FZ71e-127YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A0D9VWY41e-140A0A0D9VWY4_9ORYZ; Uncharacterized protein
STRINGBGIOSGA013223-PA1e-125(Oryza sativa Indica Group)
STRINGLOC_Os03g44710.11e-125(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-59YABBY family protein